obsidian-semantic

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commit b8129015b6c499dce37778b1b004c60d35eeb98e
parent e60294b9506f44c407b214f2a4c20f22f1b9bec6
Author: Thomas Vigouroux <thomas.vigouroux@univ-grenoble-alpes.fr>
Date:   Tue,  2 Apr 2024 09:46:31 +0200

Initial commit

Diffstat:
ASemanticsSettings.ts | 39+++++++++++++++++++++++++++++++++++++++
Mmain.ts | 307++++++++++++++++++++++++++++++++++++++++++++++++++++++++++---------------------
Mmanifest.json | 12+++++-------
Apackage-lock.json | 2240+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Mpackage.json | 3+++
5 files changed, 2513 insertions(+), 88 deletions(-)

diff --git a/SemanticsSettings.ts b/SemanticsSettings.ts @@ -0,0 +1,39 @@ +import { App, PluginSettingTab, Setting } from 'obsidian'; +import SemanticIntegration from 'main'; + +export class SemanticsSettings extends PluginSettingTab { + plugin: SemanticIntegration; + + constructor(app: App, plugin: SemanticIntegration) { + super(app, plugin); + this.plugin = plugin; + } + + display() { + const { containerEl } = this; + + containerEl.empty(); + + new Setting(containerEl) + .setName("Papers directory") + .setDesc("Where to store notes for papers") + .addText(text => text + .setPlaceholder("papers") + .setValue(this.plugin.settings.papersPath) + .onChange(async (value) => { + this.plugin.settings.papersPath = value; + await this.plugin.saveSettings(); + })); + + new Setting(containerEl) + .setName("API Key") + .setDesc("API Key to use") + .addText(text => text + .setPlaceholder("api key") + .setValue(this.plugin.settings.apiKey == null ? "" : this.plugin.settings.apiKey) + .onChange(async (value) => { + this.plugin.settings.apiKey = value == "" ? null : value; + await this.plugin.saveSettings(); + })); + } +} diff --git a/main.ts b/main.ts @@ -1,85 +1,190 @@ -import { App, Editor, MarkdownView, Modal, Notice, Plugin, PluginSettingTab, Setting } from 'obsidian'; +import { SemanticsSettings } from 'SemanticsSettings'; +import { App, Editor, MarkdownView, Modal, Notice, Plugin, SuggestModal, TFile, TFolder, Vault, requestUrl, RequestUrlParam } from 'obsidian'; +import pDebounce from 'p-debounce'; +import * as path from 'path'; + +const baseURL: string = "https://api.semanticscholar.org/graph/v1"; // Remember to rename these classes and interfaces! -interface MyPluginSettings { - mySetting: string; +interface SemanticSettings { + papersPath: string; + apiKey: string | null; } -const DEFAULT_SETTINGS: MyPluginSettings = { - mySetting: 'default' +const DEFAULT_SETTINGS: SemanticSettings = { + papersPath: 'papers', + apiKey: null } -export default class MyPlugin extends Plugin { - settings: MyPluginSettings; +class SemInfos { + bibtex: string; + id?: string; + + constructor(bibtex: string, id?: string) { + this.bibtex = bibtex; + this.id = id; + } + + static async fromFile(app: App, file: TFile): Promise<SemInfos> { + var id: string | undefined = undefined; + await app.fileManager.processFrontMatter(file, (frontmatter) => { + id = frontmatter["semid"]; + }); + var content = await app.vault.cachedRead(file); + var bibtex = ""; + var inblock = false; + + // Extracts the first bibtex block of the file + for (const line of content.split(/\r?\n/)) { + if (line.trim() == '```bibtex' && !inblock) { + inblock = true; + } else if (line.trim() == '```' && inblock) { + // Finished the bibtex block + break; + } else if (inblock) { + bibtex += line + "\n"; + } + } + + return new SemInfos(bibtex, id); + } +} + +class Author { + authorId: string; + name: string; +} + +class Paper { + paperId: string; + title: string; + authors: Author[]; + year: string; + externalIds?: { DBLP?: string }; + citationStyles?: { bibtex: string }; + citations?: Paper[]; + references?: Paper[]; + + static fields(): string { + return "title,authors,year,paperId"; + } + + static fieldsLong(): string { + return Paper.fields() + ",externalIds,citationStyles,citations,references" + } + + static async get(id: string, long?: boolean, key?: string): Promise<Paper> { + if (key != undefined) { + + } + var request: RequestUrlParam = { + url: `${baseURL}/paper/${id.trim()}?fields=${long ? Paper.fields() : Paper.fieldsLong()}`, + headers: key == null ? {} : { + 'x-api-key': key + } + } + return requestUrl(request).json; + } + + static async getBulk(ids: string[], long?: boolean, key?: string): Promise<Paper[]> { + return requestUrl({ + url: `${baseURL}/paper/batch?fields=${long ? Paper.fields() : Paper.fieldsLong()}`, + method: "POST", + contentType: "application/json", + body: JSON.stringify({ids: ids}), + headers: key == null ? {} : { + 'x-api-key': key + } + }).json; + } +} + +export default class SemanticIntegration extends Plugin { + settings: SemanticSettings; + + openModal() { + new SemanticModal(this.app, this.settings).open(); + } + + getPapersFolder(): TFolder { + var mfolder = this.app.vault.getAbstractFileByPath(this.settings.papersPath); + if (mfolder instanceof TFolder) { + return mfolder; + } else { + throw new Error("Papers folder is not a folder"); + } + } async onload() { await this.loadSettings(); - // This creates an icon in the left ribbon. - const ribbonIconEl = this.addRibbonIcon('dice', 'Sample Plugin', (evt: MouseEvent) => { - // Called when the user clicks the icon. - new Notice('This is a notice!'); + this.addRibbonIcon('book-plus', 'Add a new reference', (evt: MouseEvent) => { + this.openModal(); }); - // Perform additional things with the ribbon - ribbonIconEl.addClass('my-plugin-ribbon-class'); - // This adds a status bar item to the bottom of the app. Does not work on mobile apps. - const statusBarItemEl = this.addStatusBarItem(); - statusBarItemEl.setText('Status Bar Text'); + // this.addCommand({ + // id: 'get-semantic-infos', + // name: 'Get semantic informations', + // callback: () => { + // this.getNoteInfos(); + // } + // }) - // This adds a simple command that can be triggered anywhere this.addCommand({ - id: 'open-sample-modal-simple', - name: 'Open sample modal (simple)', + id: 'open-semantic-modal', + name: 'Open Semantic Scholar search', callback: () => { - new SampleModal(this.app).open(); - } - }); - // This adds an editor command that can perform some operation on the current editor instance - this.addCommand({ - id: 'sample-editor-command', - name: 'Sample editor command', - editorCallback: (editor: Editor, view: MarkdownView) => { - console.log(editor.getSelection()); - editor.replaceSelection('Sample Editor Command'); + this.openModal(); } }); - // This adds a complex command that can check whether the current state of the app allows execution of the command + this.addCommand({ - id: 'open-sample-modal-complex', - name: 'Open sample modal (complex)', - checkCallback: (checking: boolean) => { - // Conditions to check - const markdownView = this.app.workspace.getActiveViewOfType(MarkdownView); - if (markdownView) { - // If checking is true, we're simply "checking" if the command can be run. - // If checking is false, then we want to actually perform the operation. - if (!checking) { - new SampleModal(this.app).open(); - } + id: "extract-bibtex", + name: 'Extract bibliography to bibtex', + callback: async () => { + var allbibtex: string = ""; - // This command will only show up in Command Palette when the check function returns true - return true; + var folder = this.getPapersFolder(); + for (const mfile of folder.children) { + if (mfile instanceof TFile) { + var infos = await SemInfos.fromFile(this.app, mfile); + allbibtex += infos.bibtex; + } } + Vault.recurseChildren(folder, async (mfile) => { + }); + + console.log(allbibtex); + await this.app.vault.create("biblio.bib", allbibtex); } }); - // This adds a settings tab so the user can configure various aspects of the plugin - this.addSettingTab(new SampleSettingTab(this.app, this)); + this.addCommand({ + id: 'search-papers', + name: 'Search list of papers', + callback: async () => { + var folder = this.getPapersFolder(); - // If the plugin hooks up any global DOM events (on parts of the app that doesn't belong to this plugin) - // Using this function will automatically remove the event listener when this plugin is disabled. - this.registerDomEvent(document, 'click', (evt: MouseEvent) => { - console.log('click', evt); - }); + var ids = []; + for (const file of folder.children) { + if (file instanceof TFile) { + var infos = await SemInfos.fromFile(this.app, file); + if (infos.id != undefined) { + ids.push(infos.id); + } + } + } + + // TODO: fuzzy modal + console.log(await Paper.getBulk(ids)); + } + }) - // When registering intervals, this function will automatically clear the interval when the plugin is disabled. - this.registerInterval(window.setInterval(() => console.log('setInterval'), 5 * 60 * 1000)); + this.addSettingTab(new SemanticsSettings(this.app, this)); } onunload() { - } async loadSettings() { @@ -89,46 +194,86 @@ export default class MyPlugin extends Plugin { async saveSettings() { await this.saveData(this.settings); } + + async getNoteInfos() { + var file = this.app.workspace.getActiveFile(); + if (file == null) { + return; + } + + var infos = await SemInfos.fromFile(this.app, file); + if (infos.id != undefined) { + console.log(await Paper.get(infos.id, true)); + } + } } -class SampleModal extends Modal { - constructor(app: App) { +const debouncedRequest = pDebounce(requestUrl, 1000); + +class SemanticModal extends SuggestModal<Paper> { + options: SemanticSettings + + constructor(app: App, options: SemanticSettings) { super(app); + this.options = options; } - onOpen() { - const {contentEl} = this; - contentEl.setText('Woah!'); - } + async getSuggestions(query: string): Promise<Paper[]> { + if (query == "") { + return []; + } - onClose() { - const {contentEl} = this; - contentEl.empty(); + var request: RequestUrlParam = { + url: `${baseURL}/paper/search?query=${encodeURIComponent(query)}&fields=${Paper.fields()}&limit=10`, + headers: this.options.apiKey == null ? {} : { + 'x-api-key': this.options.apiKey + } + } + + var result: Paper[] = (await debouncedRequest(request)).json.data; + + return result; } -} -class SampleSettingTab extends PluginSettingTab { - plugin: MyPlugin; + renderSuggestion(value: Paper, el: HTMLElement) { + el.createEl("div", { text: value.title }); - constructor(app: App, plugin: MyPlugin) { - super(app, plugin); - this.plugin = plugin; + var authors = ""; + if (value.authors.length <= 2) { + authors = value.authors.map(auth => auth.name).join(""); + } else { + authors = `${value.authors[0].name} et al.` + } + + el.createEl("small", { text: `${value.year} - ${authors}` }); } - display(): void { - const {containerEl} = this; + async onChooseSuggestion(item: Paper, evt: MouseEvent | KeyboardEvent) { + var final = await Paper.get(item.paperId); + + var title = final.title.split(":")[0]; + var fname = path.join(this.options.papersPath, title) + ".md"; + + if (final.citationStyles == undefined || final.externalIds == undefined) { + throw new Error("Missing fields in paper"); + } - containerEl.empty(); + // Generate the body of the note + var body = ""; + var unparsedbib = final.citationStyles.bibtex; + if (final.externalIds.DBLP != undefined) { + var result = await requestUrl(`https://dblp.org/rec/${final.externalIds.DBLP}.bib?param=0`).text; + unparsedbib = result.trim(); + } - new Setting(containerEl) - .setName('Setting #1') - .setDesc('It\'s a secret') - .addText(text => text - .setPlaceholder('Enter your secret') - .setValue(this.plugin.settings.mySetting) - .onChange(async (value) => { - this.plugin.settings.mySetting = value; - await this.plugin.saveSettings(); - })); + var body = `\`\`\`bibtex +${unparsedbib} +\`\`\` +` + var file = await this.app.vault.create(fname, body); + this.app.fileManager.processFrontMatter(file, (frontmatter) => { + frontmatter["semid"] = final.paperId; + }) + await this.app.workspace.openLinkText(fname, fname); } } diff --git a/manifest.json b/manifest.json @@ -1,11 +1,9 @@ { - "id": "sample-plugin", - "name": "Sample Plugin", - "version": "1.0.0", + "id": "obsidian-semantic", + "name": "Semantic scholar integration", + "version": "0.1.0", "minAppVersion": "0.15.0", - "description": "Demonstrates some of the capabilities of the Obsidian API.", - "author": "Obsidian", - "authorUrl": "https://obsidian.md", - "fundingUrl": "https://obsidian.md/pricing", + "description": "Integrates semantic scholar into Obsidian", + 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